RetrogeneDB ID: | retro_ptro_1005 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 15:39257875..39258177(+) | ||
Located in intron of: | ENSPTRG00000006973 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSPTRG00000003067 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.89 % |
Parental protein coverage: | 54.64 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | EKNSSQSEEDDIERRKEVESILKKNSDWIWDWSSRPENIPPKEFLF-KHPKRTATLSMRNTSVMKKGGIF |
EKNSSQSEED..E.RKEVESILKKNSDWIW.W.S.PENIP.KEFLF.KH.K..AT.........K.G.IF | |
Retrocopy | EKNSSQSEEDT-EKRKEVESILKKNSDWIWNWTSWPENIPHKEFLF>KHLKHVATQHGI*SLMRKGG-IF |
Parental | SAEFLK-VFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF |
SAEF.K.V.L.S.L....L.I..G....R.LTTSTSTF | |
Retrocopy | SAEFPK>VLLLSHLVAMGLGIYIG----RHLTTSTSTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 98 .38 RPM |
SRP007412_cerebellum | 0 .00 RPM | 51 .51 RPM |
SRP007412_heart | 0 .06 RPM | 98 .51 RPM |
SRP007412_kidney | 0 .05 RPM | 70 .09 RPM |
SRP007412_liver | 0 .00 RPM | 53 .55 RPM |
SRP007412_testis | 0 .21 RPM | 29 .51 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1486 |
Gorilla gorilla | retro_ggor_1138 |