RetrogeneDB ID: | retro_ggor_1439 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 19:23015076..23015645(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSGGOG00000014520 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.43 % |
Parental protein coverage: | 98.97 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | QNGAPGMQEESLQGSWVELHFSNNGNGSSVPASVSIYNGDMEKILLDAQHES-GRSSSKSSHCDSPPRSQ |
Q.G.P..QE.SLQ.SW.ELH...NGN..S..ASV.IYNGDMEK.LLD.Q.ES..R.SSKSSHCDSPP..Q | |
Retrocopy | QRGKPELQEKSLQASWGELHLHINGNWNSNSASVFIYNGDMEKPLLDFQQES>DRDSSKSSHCDSPPLLQ |
Parental | TPQDTNRASETDTHSIGEKNSSQSEEDDIERRKEVESILKKNSDWIWDWSSRPEN-IPPKEFLFKHPKRT |
TP..T..A...DT.S.G.KNSSQSE.D..ER.KEV..IL.KNS....D.SS.PEN....KEFL....K.T | |
Retrocopy | TPGNTYNA---DTQSTGQKNSSQSEQDYAERKKEVKTILGKNSV*T*D*SSQPEN>LS*KEFLSQQAKYT |
Parental | ATLSMRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF |
.TLSMRN.S.MKK.GIFSAEF.KV.LPSLLLSHLLAI..G..I...LT.STSTF | |
Retrocopy | TTLSMRNMSIMKKRGIFSAEF*KVSLPSLLLSHLLAIEWGFHIEIHLTISTSTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 80 .80 RPM |
SRP007412_cerebellum | 0 .00 RPM | 47 .83 RPM |
SRP007412_heart | 0 .00 RPM | 29 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 89 .71 RPM |
SRP007412_liver | 0 .00 RPM | 84 .57 RPM |
SRP007412_testis | 0 .00 RPM | 59 .05 RPM |