RetrogeneDB ID: | retro_hsap_2042 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 19:22631225..22631544(-) | ||
Located in intron of: | ENSG00000197360 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000268830 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSG00000176171 | ||
Aliases: | None | ||
Description: | BCL2/adenovirus E1B 19kDa interacting protein 3 [Source:HGNC Symbol;Acc:1084] |
Percent Identity: | 65.42 % |
Parental protein coverage: | 58.89 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | QNGAPGMQEESLQGSWVELHFSNNGNGGSVPASVSIYNGDMEKILLDAQHES-GRSSSKSSHCDSPPRSQ |
Q...P..QEESLQ.SWV.LH...NGNG.SV.AS.SIYNGDM.KILLD.QHES..R..SK.S.CDSPP.SQ | |
Retrocopy | QTMKPELQEESLQASWVKLHLHDNGNGSSVSASASIYNGDMKKILLDFQHES>DRDRSKNSPCDSPPYSQ |
Parental | TPQDTNRASETDTHSIGEKNSSQSEEDDIERRKEVES |
TP.DTNR..ETDT..I..KNSS.SE.D.IER...V.. | |
Retrocopy | TPWDTNRTPETDTQRI*AKNSSLSEQDYIERK*KVKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 44 .33 RPM |
bodymap2_adrenal | 0 .00 RPM | 10 .87 RPM |
bodymap2_brain | 0 .07 RPM | 89 .99 RPM |
bodymap2_breast | 0 .00 RPM | 50 .86 RPM |
bodymap2_colon | 0 .00 RPM | 54 .80 RPM |
bodymap2_heart | 0 .00 RPM | 96 .75 RPM |
bodymap2_kidney | 0 .00 RPM | 59 .73 RPM |
bodymap2_liver | 0 .00 RPM | 85 .68 RPM |
bodymap2_lung | 0 .00 RPM | 21 .48 RPM |
bodymap2_lymph_node | 0 .00 RPM | 28 .96 RPM |
bodymap2_ovary | 0 .00 RPM | 28 .72 RPM |
bodymap2_prostate | 0 .00 RPM | 40 .91 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 162 .78 RPM |
bodymap2_testis | 0 .00 RPM | 41 .48 RPM |
bodymap2_thyroid | 0 .08 RPM | 42 .54 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 10 .81 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1359 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |