Parental gene:

PHB, ENSPPYG00000008920

Aliases:None
Description:prohibitin [Source:HGNC Symbol;Acc:8912]
Organism:Orangutan (Pongo abelii)
Coordinates:17_random:13355520..13366522(-)


>ENSPPYG00000008920
ATGGCTGCCAAAGTGTTTGAGTCCATTGGCAAGTTTGGCCTGGCCTTAGCTGTTGCAGGAGGCGTGGTGAACTCTGCCTT
ATATAATGTGGATGCTGGGCACAGAGCTGTCATCTTTGACCGATTCCGTGGAGTGCAGGACATTGTGGTAGGGGAAGGGA
CTCATTTTCTCATCCCATGGGTACAGAAACCAATTATCTTTGACTGCCGTTCTCGACCACGTAATGTGCCAGTCATCACT
GGTAGCAAAGATTTACAGAATGTCAACATCACACTGCGCATCCTCTTCCGGCCTGTCGCTAGCCAGCTTCCTCGCATCTT
CACCAGCATCGGAGAGGACTATGATGAGCGTGTGCTGCCGTCCATCACGACCGAGATCCTCAAGTCAGTGGTGGCTCGTT
TTGATGCTGGAGAACTAATCACCCAGAGAGAGCTGGTTTCCAGGCAGGTGAGCGATGACCTTACGGAGCGAGCCGCCACC
TTTGGGCTCATCCTGGATGACGTGTCCTTGACACATCTGACCTTCGGGAAGGAGTTCACAGAAGCGGTGGAAGCCAAACA
GGTGGCTCAGCAGGAAGCAGAGAGGGCCAGATTTGTGGTGGAAAAGGCTGAGCAACAGAAAAAGGCGGCCATCATCTCTG
CTGAGGGCGACTCCAAGGCAGCTGAGCTGATTGCCAACTCACTGGCCACTGCAGGGGATGGCCTGATCGAGCTGCGCAAG
CTGGAAGCTGCGGAGGACATCGCGTACCAGCTCTCACGCTCTCGGAACATCACCTACCTGCCGGCGGGGCAGTCCGTGCT
CCTCCAGCTGCCCCAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 84 .54 RPM
SRP007412_cerebellum 38 .79 RPM
SRP007412_heart 81 .52 RPM
SRP007412_kidney 193 .51 RPM
SRP007412_liver 78 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004797 ortholog_one2one 1 retrogene
retro_acar_49,
Canis familiaris ENSCAFG00000016926 possible_ortholog 1 retrogene
retro_cfam_202,
Choloepus hoffmanni ENSCHOG00000007588 possible_ortholog 2 retrogenes
retro_chof_1159, retro_chof_2193,
Callithrix jacchus ENSCJAG00000007174 ortholog_one2one 22 retrogenes
retro_cjac_1048, retro_cjac_1403, retro_cjac_1683, retro_cjac_1761, retro_cjac_1820, retro_cjac_2261, retro_cjac_2389, retro_cjac_2390, retro_cjac_2391, retro_cjac_2445, retro_cjac_2523, retro_cjac_2659, retro_cjac_2663, retro_cjac_2909, retro_cjac_4205, retro_cjac_570, retro_cjac_635, retro_cjac_662, retro_cjac_872, retro_cjac_937, retro_cjac_966, retro_cjac_980,
Erinaceus europaeus ENSEEUG00000006481 ortholog_one2one 3 retrogenes
retro_eeur_219, retro_eeur_285, retro_eeur_369,
Homo sapiens ENSG00000167085 ortholog_one2one 15 retrogenes
retro_hsap_1113, retro_hsap_1514, retro_hsap_161, retro_hsap_1640, retro_hsap_2170, retro_hsap_2692, retro_hsap_3534, retro_hsap_3750, retro_hsap_3868, retro_hsap_3869, retro_hsap_4186, retro_hsap_4888, retro_hsap_517, retro_hsap_617, retro_hsap_776,
Gorilla gorilla ENSGGOG00000028002 possible_ortholog 12 retrogenes
retro_ggor_124, retro_ggor_1722, retro_ggor_1876, retro_ggor_238, retro_ggor_2387, retro_ggor_246, retro_ggor_2607, retro_ggor_3053, retro_ggor_476, retro_ggor_643, retro_ggor_741, retro_ggor_870,
Macropus eugenii ENSMEUG00000005122 ortholog_one2one 1 retrogene
retro_meug_708,
Myotis lucifugus ENSMLUG00000008203 possible_ortholog 2 retrogenes
retro_mluc_116, retro_mluc_2190,
Macaca mulatta ENSMMUG00000000156 possible_ortholog 13 retrogenes
retro_mmul_1096, retro_mmul_1119, retro_mmul_1165, retro_mmul_1425, retro_mmul_151, retro_mmul_1565, retro_mmul_2148, retro_mmul_2420, retro_mmul_426, retro_mmul_521, retro_mmul_834, retro_mmul_866, retro_mmul_933,
Monodelphis domestica ENSMODG00000012210 ortholog_one2one 1 retrogene
retro_mdom_812,
Otolemur garnettii ENSOGAG00000027015 possible_ortholog 1 retrogene
retro_ogar_968,
Procavia capensis ENSPCAG00000008851 ortholog_one2one 1 retrogene
retro_pcap_74,
Pan troglodytes ENSPTRG00000009376 ortholog_one2one 14 retrogenes
retro_ptro_1025, retro_ptro_1110, retro_ptro_154, retro_ptro_1656, retro_ptro_1817, retro_ptro_2401, retro_ptro_2545, retro_ptro_2841, retro_ptro_2964, retro_ptro_3256, retro_ptro_386, retro_ptro_451, retro_ptro_542, retro_ptro_686,
Rattus norvegicus ENSRNOG00000046799 possible_ortholog 18 retrogenes
retro_rnor_1058, retro_rnor_1416, retro_rnor_1540, retro_rnor_1542, retro_rnor_2398, retro_rnor_2399, retro_rnor_2610, retro_rnor_2653, retro_rnor_2815, retro_rnor_2826, retro_rnor_2848, retro_rnor_2855, retro_rnor_2909, retro_rnor_292, retro_rnor_2948, retro_rnor_2949, retro_rnor_543, retro_rnor_898,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_289 78.55 100.00
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2. retro_pabe_552 83.98 66.54
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3. retro_pabe_753 76.43 51.47
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4. retro_pabe_922 88.56 86.40
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5. retro_pabe_925 85.79 72.43
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6. retro_pabe_977 85.31 52.21
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7. retro_pabe_1262 73.11 77.21
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8. retro_pabe_1357 81.08 54.41
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9. retro_pabe_1409 82.43 54.41
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10. retro_pabe_1770 90.73 55.51
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11. retro_pabe_2291 90.31 72.06
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12. retro_pabe_3030 83.52 100.00
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13. retro_pabe_3034 83.88 100.00
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14. retro_pabe_3426 84.93 100.00
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15. retro_pabe_3427 84.93 100.00
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16. retro_pabe_3800 86.64 95.96
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Download FASTA sequences of all ENSPPYG00000008920 retrocopies