RetrogeneDB ID: | retro_hsap_517 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:224044283..224045089(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000227621 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSG00000167085 | ||
Aliases: | PHB, HEL-215, HEL-S-54e, PHB1 | ||
Description: | prohibitin [Source:HGNC Symbol;Acc:8912] |
Percent Identity: | 89.01 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR |
MAAKVF.SIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRF.GVQDIVVGEGTH.LIPWVQKPIIFDCR | |
Retrocopy | MAAKVFASIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFHGVQDIVVGEGTHCLIPWVQKPIIFDCR |
Parental | SRPRNVPVITGSKDLQNVNITLRILFRPVASQ-LPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGEL |
SRPR.VPVI.GSKDLQNVNITLRILF..VASQ...RIFTSIGEDYDERVL.SITT.ILKS...RFDAGEL | |
Retrocopy | SRPRKVPVIAGSKDLQNVNITLRILFWAVASQ<VSRIFTSIGEDYDERVLLSITTGILKSAMTRFDAGEL |
Parental | ITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKA |
ITQRELVSR.VS.DLTERAATFGLILDDVSLTHLTFGKEFTEA.EAKQVAQQE.ERARFVVEKAEQQKK. | |
Retrocopy | ITQRELVSR*VSNDLTERAATFGLILDDVSLTHLTFGKEFTEAMEAKQVAQQEVERARFVVEKAEQQKKV |
Parental | AIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLPQ |
AIISAEGDSKAAELI.NSL.TAGDGLIE....EA.EDIAY.LSRS.NITYL.AGQSVLLQLPQ | |
Retrocopy | AIISAEGDSKAAELIVNSLVTAGDGLIE---QEAVEDIAYLLSRSWNITYLLAGQSVLLQLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 39 .46 RPM |
bodymap2_adrenal | 0 .00 RPM | 52 .03 RPM |
bodymap2_brain | 0 .00 RPM | 22 .36 RPM |
bodymap2_breast | 0 .00 RPM | 45 .64 RPM |
bodymap2_colon | 0 .00 RPM | 47 .41 RPM |
bodymap2_heart | 0 .00 RPM | 35 .91 RPM |
bodymap2_kidney | 0 .00 RPM | 68 .45 RPM |
bodymap2_liver | 0 .06 RPM | 35 .78 RPM |
bodymap2_lung | 0 .00 RPM | 25 .91 RPM |
bodymap2_lymph_node | 0 .00 RPM | 30 .64 RPM |
bodymap2_ovary | 0 .00 RPM | 45 .03 RPM |
bodymap2_prostate | 0 .00 RPM | 46 .63 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 28 .39 RPM |
bodymap2_testis | 0 .00 RPM | 34 .60 RPM |
bodymap2_thyroid | 0 .08 RPM | 65 .33 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 25 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_386 |
Gorilla gorilla | retro_ggor_476 |
Macaca mulatta | retro_mmul_426 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .04 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |