RetrogeneDB ID: | retro_hsap_617 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 10:102008283..102008826(+) | ||
Located in intron of: | ENSG00000095485 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000230224 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSG00000167085 | ||
Aliases: | PHB, HEL-215, HEL-S-54e, PHB1 | ||
Description: | prohibitin [Source:HGNC Symbol;Acc:8912] |
Percent Identity: | 83.98 % |
Parental protein coverage: | 66.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | TLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAAT |
T.R....PVASQLPRI.TSI.EDYD.RVL.SITTEILKSVVA.FDAGELIT.RELVSRQ.S.DLTE.AAT | |
Retrocopy | TSRCTWGPVASQLPRILTSIEEDYDKRVLLSITTEILKSVVAHFDAGELIT*RELVSRQMSNDLTEQAAT |
Parental | FGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLAT |
FGLILDDVSLTHLTFGKEFTEAVEAKQVAQ.EAE..RFV.EKAEQQKKAAIISAEGDSKAAELIANSLAT | |
Retrocopy | FGLILDDVSLTHLTFGKEFTEAVEAKQVAQREAESTRFVAEKAEQQKKAAIISAEGDSKAAELIANSLAT |
Parental | AGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLP |
AG..LIELRKLEA.EDI..QL..S.NI..LPAGQS.LLQLP | |
Retrocopy | AGNSLIELRKLEAVEDITFQLLYSGNISSLPAGQSMLLQLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .64 RPM | 39 .46 RPM |
bodymap2_adrenal | 3 .46 RPM | 52 .03 RPM |
bodymap2_brain | 0 .80 RPM | 22 .36 RPM |
bodymap2_breast | 0 .49 RPM | 45 .64 RPM |
bodymap2_colon | 0 .10 RPM | 47 .41 RPM |
bodymap2_heart | 0 .09 RPM | 35 .91 RPM |
bodymap2_kidney | 0 .14 RPM | 68 .45 RPM |
bodymap2_liver | 0 .09 RPM | 35 .78 RPM |
bodymap2_lung | 0 .81 RPM | 25 .91 RPM |
bodymap2_lymph_node | 0 .07 RPM | 30 .64 RPM |
bodymap2_ovary | 0 .69 RPM | 45 .03 RPM |
bodymap2_prostate | 0 .47 RPM | 46 .63 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 28 .39 RPM |
bodymap2_testis | 0 .47 RPM | 34 .60 RPM |
bodymap2_thyroid | 1 .09 RPM | 65 .33 RPM |
bodymap2_white_blood_cells | 0 .16 RPM | 25 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_451 |
Pongo abelii | retro_pabe_552 |
Macaca mulatta | retro_mmul_2420 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .90 RPM |
CEU_NA11843 | 0 .80 RPM |
CEU_NA11930 | 0 .91 RPM |
CEU_NA12004 | 0 .15 RPM |
CEU_NA12400 | 0 .25 RPM |
CEU_NA12751 | 0 .90 RPM |
CEU_NA12760 | 0 .49 RPM |
CEU_NA12827 | 0 .99 RPM |
CEU_NA12872 | 0 .76 RPM |
CEU_NA12873 | 0 .70 RPM |
FIN_HG00183 | 1 .29 RPM |
FIN_HG00277 | 1 .18 RPM |
FIN_HG00315 | 0 .44 RPM |
FIN_HG00321 | 0 .94 RPM |
FIN_HG00328 | 0 .83 RPM |
FIN_HG00338 | 0 .51 RPM |
FIN_HG00349 | 0 .17 RPM |
FIN_HG00375 | 0 .61 RPM |
FIN_HG00377 | 0 .18 RPM |
FIN_HG00378 | 0 .49 RPM |
GBR_HG00099 | 0 .41 RPM |
GBR_HG00111 | 0 .28 RPM |
GBR_HG00114 | 0 .76 RPM |
GBR_HG00119 | 0 .84 RPM |
GBR_HG00131 | 1 .18 RPM |
GBR_HG00133 | 0 .77 RPM |
GBR_HG00134 | 1 .24 RPM |
GBR_HG00137 | 0 .82 RPM |
GBR_HG00142 | 0 .92 RPM |
GBR_HG00143 | 0 .22 RPM |
TSI_NA20512 | 0 .34 RPM |
TSI_NA20513 | 0 .89 RPM |
TSI_NA20518 | 0 .44 RPM |
TSI_NA20532 | 1 .16 RPM |
TSI_NA20538 | 0 .64 RPM |
TSI_NA20756 | 0 .29 RPM |
TSI_NA20765 | 1 .22 RPM |
TSI_NA20771 | 0 .57 RPM |
TSI_NA20786 | 0 .24 RPM |
TSI_NA20798 | 0 .41 RPM |
YRI_NA18870 | 0 .74 RPM |
YRI_NA18907 | 0 .38 RPM |
YRI_NA18916 | 0 .67 RPM |
YRI_NA19093 | 0 .29 RPM |
YRI_NA19099 | 0 .53 RPM |
YRI_NA19114 | 0 .24 RPM |
YRI_NA19118 | 0 .21 RPM |
YRI_NA19213 | 0 .62 RPM |
YRI_NA19214 | 0 .39 RPM |
YRI_NA19223 | 0 .97 RPM |