RetrogeneDB ID: | retro_pcap_74 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_4106:36145..36751(+) | ||
Located in intron of: | ENSPCAG00000000737 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSPCAG00000008851 | ||
Aliases: | None | ||
Description: | prohibitin [Source:HGNC Symbol;Acc:8912] |
Percent Identity: | 50.98 % |
Parental protein coverage: | 74.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VIFDRFRGVQ-DIVIGEGTHFLIPWVQKPIIFDCRSRPRNVPVITSSKDLQNVNVTLRILFRPVASQLPR |
..F....GVQ.D.....G.HF.IPW.Q.PII.D...RPR.....T.SKDLQ.VNV.LR.L.RP.A..LP. | |
Retrocopy | IFFNHISGVQKDTILAKGLHFRIPWFQYPIIYDIQARPRKISP-TGSKDLQMVNVSLRVLSRPLALELPS |
Parental | IFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTF |
.....G.DY.ERVLPSI....LKSVVA...A..LITQR..VS......LTE.A..F.LILDDV..T.L.F | |
Retrocopy | LHQHLGLDYEERVLPSIVNKVLKSVVAKYNASQLITQRAQVSLLI*RELTEGAKDFSLILDDVAITELSF |
Parental | GKEFTDAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELR |
..E.T.AV.AKQVAQQEA..A.F.VEK..Q.....I..AEG...AA......L.....G.I.LR | |
Retrocopy | SREYTAAVGAKQVAQQEAQQAQFLVEKVKQEQRQKIMQAEGEAEAAGMLGEAL-SKNPGYIKLR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |