RetrogeneDB ID: | retro_ptro_1025 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 15:70024368..70025105(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSPTRG00000009376 | ||
Aliases: | None | ||
Description: | Pan troglodytes prohibitin (PHB), mRNA. [Source:RefSeq mRNA;Acc:NM_001246403] |
Percent Identity: | 69.84 % |
Parental protein coverage: | 92.28 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR |
MAAKVFESI...GLAL..AGG.VNSALYNVDAGHRAVIFD.F.G......G.G...L...........C. | |
Retrocopy | MAAKVFESI---GLALVAAGGMVNSALYNVDAGHRAVIFD*FWGTGHC--GSGKNSLSHPMDTETDYLCH |
Parental | SRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELI |
SRPR.VPVIT.SKDLQNVN..LRILF.PV.SQLP.IFTS.GE..DE.VLPSITT.ILK.VV.RF.A.E.I | |
Retrocopy | SRPRKVPVITSSKDLQNVNTPLRILFLPVPSQLPCIFTSMGEGCDEPVLPSITTDILKQVVVRFEAAEAI |
Parental | TQRELVSRQVSDDLTER-AATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKA |
TQRE.VS.QV.DDL.E...ATF.L.LDD.S.THLTFGKEFTEAVEAKQV.QQEAERARFVVEKA.QQKKA | |
Retrocopy | TQREVVSKQVKDDLMEQ<VATF*LMLDDTSSTHLTFGKEFTEAVEAKQVGQQEAERARFVVEKAGQQKKA |
Parental | AIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQL |
..ISAEGDSKAAEL.A.SLAT.G..L.E....EA..D.A.QL | |
Retrocopy | TMISAEGDSKAAELTATSLATMGTCLMEPCQPEATGDTACQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .30 RPM | 74 .79 RPM |
SRP007412_cerebellum | 0 .11 RPM | 61 .05 RPM |
SRP007412_heart | 0 .12 RPM | 103 .00 RPM |
SRP007412_kidney | 0 .13 RPM | 261 .10 RPM |
SRP007412_liver | 0 .20 RPM | 155 .59 RPM |
SRP007412_testis | 0 .74 RPM | 42 .36 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1514 |
Pongo abelii | retro_pabe_1262 |
Macaca mulatta | retro_mmul_2148 |
Callithrix jacchus | retro_cjac_662 |