RetrogeneDB ID: | retro_sscr_508 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 15:114486472..114486905(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000028850 | ||
Aliases: | None | ||
Description: | Sus scrofa ribosomal protein L26 (RPL26), mRNA. [Source:RefSeq mRNA;Acc:NM_001243458] |
Percent Identity: | 77.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MKFNPF-VTSDRSKNRKRHFNAPSHIRRKIMSSP-LSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIG |
MKFN...VTSD..KNRK.H.N.PS.I.RKI.SSP.LSKELRQKYNV.SMPIRKDDEVQVV...YKGQQ.G | |
Retrocopy | MKFNTL<VTSDGIKNRKMHLNEPSCICRKIISSP<LSKELRQKYNV*SMPIRKDDEVQVVQRQYKGQQTG |
Parental | KVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEE |
KV.Q.Y.KKYVIY.ERVQ.EKANG.T.HVGIHPSKVVI.RL.LDKD.KKILE.KAK...VGKEKGKYK.E | |
Retrocopy | KVIQIYGKKYVIYTERVQWEKANGMTAHVGIHPSKVVIARLTLDKDHKKILECKAKY**VGKEKGKYKGE |
Parental | TIEKMQE |
TIE.MQE | |
Retrocopy | TIENMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 676 .53 RPM |
SRP014902_testis | 0 .00 RPM | 767 .35 RPM |
SRP018288_heart | 0 .00 RPM | 547 .76 RPM |
SRP018288_kidney | 0 .00 RPM | 308 .62 RPM |
SRP018288_liver | 0 .00 RPM | 284 .16 RPM |
SRP018288_lung | 0 .00 RPM | 878 .45 RPM |
SRP018856_adipose | 0 .00 RPM | 1432 .76 RPM |
SRP035408_brain | 0 .00 RPM | 1221 .76 RPM |
SRP035408_liver | 0 .00 RPM | 962 .96 RPM |