RetrogeneDB ID: | retro_sscr_609 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 18:55987366..55987782(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000028850 | ||
Aliases: | None | ||
Description: | Sus scrofa ribosomal protein L26 (RPL26), mRNA. [Source:RefSeq mRNA;Acc:NM_001243458] |
Percent Identity: | 69.8 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MKFNPF-VTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGK |
M.FNP..VTSD.SKNRKRHFNAP...........LSKELR.KYNV.SMPIRKDD.VQVVRGHY.GQQ.GK | |
Retrocopy | MRFNPL<VTSD*SKNRKRHFNAPPTFAGRLC---LSKELRHKYNV*SMPIRKDDDVQVVRGHYEGQQAGK |
Parental | VVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVV-IT-RLKLDKDRKKILERKAKSRQVGKE-KGKYK |
V....R...VIY.E.VQ.EKA.GTTVHVGIHP..VV..T.RLKLDKD.KK.....A.SRQ.GKE.KGKYK | |
Retrocopy | VQADWRNR-VIYTE*VQWEKAHGTTVHVGIHPRGVV>VTTRLKLDKDHKK---TNATSRQAGKE<KGKYK |
Parental | EETIEKMQE |
EETIEKMQE | |
Retrocopy | EETIEKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .13 RPM | 676 .53 RPM |
SRP014902_testis | 0 .28 RPM | 767 .35 RPM |
SRP018288_heart | 0 .10 RPM | 547 .76 RPM |
SRP018288_kidney | 0 .49 RPM | 308 .62 RPM |
SRP018288_liver | 0 .80 RPM | 284 .16 RPM |
SRP018288_lung | 0 .00 RPM | 878 .45 RPM |
SRP018856_adipose | 0 .02 RPM | 1432 .76 RPM |
SRP035408_brain | 0 .10 RPM | 1221 .76 RPM |
SRP035408_liver | 0 .00 RPM | 962 .96 RPM |