Parental gene:

ENSSSCG00000028850

Aliases:None
Description:Sus scrofa ribosomal protein L26 (RPL26), mRNA. [Source:RefSeq mRNA;Acc:NM_001243458]
Organism:Pig (Sus scrofa)
Coordinates:12:56024031..56029925(-)


>ENSSSCG00000028850
ATGAAGTTCAATCCTTTTGTGACCTCCGACCGAAGCAAGAACCGTAAAAGGCATTTCAATGCACCTTCCCACATTCGCAG
GAAGATTATGTCTTCCCCTCTTTCCAAAGAGCTGAGACAGAAGTACAATGTTCGATCCATGCCCATCCGAAAGGACGATG
AAGTTCAGGTTGTACGAGGGCACTACAAGGGGCAGCAGATTGGCAAAGTAGTCCAGGTTTACAGGAAGAAATACGTCATC
TACATTGAACGAGTGCAGCGGGAGAAGGCTAATGGCACAACTGTCCATGTGGGCATTCACCCCAGCAAGGTGGTTATCAC
TAGACTAAAACTGGACAAGGACCGCAAAAAGATACTTGAACGTAAAGCCAAATCTCGCCAAGTAGGAAAGGAAAAGGGAA
AATATAAGGAAGAAACCATTGAGAAGATGCAGGAATAA

Library Parental gene expression (RPM)
SRP014902_placenta 676 .53 RPM
SRP014902_testis 767 .35 RPM
SRP018288_heart 547 .76 RPM
SRP018288_kidney 308 .62 RPM
SRP018288_liver 284 .16 RPM
SRP018288_lung 878 .45 RPM
SRP018856_adipose 1432 .76 RPM
SRP035408_brain 1221 .76 RPM
SRP035408_liver 962 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002453 possible_ortholog 7 retrogenes
Bos taurus ENSBTAG00000012344 possible_ortholog 2 retrogenes
Choloepus hoffmanni ENSCHOG00000004703 possible_ortholog 10 retrogenes
Callithrix jacchus ENSCJAG00000014372 possible_ortholog 8 retrogenes
Cavia porcellus ENSCPOG00000001315 possible_ortholog 10 retrogenes
Dasypus novemcinctus ENSDNOG00000002470 possible_ortholog 3 retrogenes
Equus caballus ENSECAG00000015757 ortholog_one2one 4 retrogenes
Felis catus ENSFCAG00000011259 possible_ortholog 13 retrogenes
Homo sapiens ENSG00000161970 possible_ortholog 27 retrogenes
Gorilla gorilla ENSGGOG00000023944 possible_ortholog 4 retrogenes
Macropus eugenii ENSMEUG00000009891 possible_ortholog 7 retrogenes
Myotis lucifugus ENSMLUG00000002176 possible_ortholog 1 retrogene
Macaca mulatta ENSMMUG00000003448 possible_ortholog 22 retrogenes
Monodelphis domestica ENSMODG00000006201 ortholog_one2one 2 retrogenes
Mustela putorius furo ENSMPUG00000007988 ortholog_one2one 12 retrogenes
Mus musculus ENSMUSG00000060938 possible_ortholog 21 retrogenes
Nomascus leucogenys ENSNLEG00000009981 ortholog_one2one 1 retrogene
Oryctolagus cuniculus ENSOCUG00000006538 possible_ortholog 11 retrogenes
Otolemur garnettii ENSOGAG00000017070 possible_ortholog 3 retrogenes
Pan troglodytes ENSPTRG00000008742 possible_ortholog 3 retrogenes
Rattus norvegicus ENSRNOG00000004214 possible_ortholog 3 retrogenes
Sorex araneus ENSSARG00000005798 possible_ortholog 13 retrogenes
Sarcophilus harrisii ENSSHAG00000006890 ortholog_one2one 1 retrogene
Sus scrofa ENSSSCG00000016989 within_species_paralog 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000021923 possible_ortholog 6 retrogenes
Tupaia belangeri ENSTBEG00000007749 possible_ortholog 53 retrogenes
Tarsius syrichta ENSTSYG00000001483 possible_ortholog 17 retrogenes
Vicugna pacos ENSVPAG00000000279 possible_ortholog 4 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_261 80.99 97.24
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2. retro_sscr_363 63.93 84.14
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3. retro_sscr_426 57.63 79.31
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4. retro_sscr_427 57.63 79.31
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5. retro_sscr_471 77.55 100.00
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6. retro_sscr_485 62.50 92.41
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7. retro_sscr_508 77.55 100.00
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8. retro_sscr_609 69.80 100.00
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9. retro_sscr_736 66.20 95.17
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Download FASTA sequences of all ENSSSCG00000028850 retrocopies