RetrogeneDB ID: | retro_amel_1112 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192914.1:858907..859175(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPE | ||
Ensembl ID: | ENSAMEG00000000882 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide E [Source:HGNC Symbol;Acc:11161] |
Percent Identity: | 68.82 % |
Parental protein coverage: | 97.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | YRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRKEGCIIGFDEYMNLV-LDDAEEIHSKT-KS |
.RG.G.KVQKVMV.PI.LIFRYLQN.SRIQV.LYEQVN...EG.IIG.DEY.N.V..D..EEIHSKT.K. | |
Retrocopy | HRGEGHKVQKVMVWPIDLIFRYLQNSSRIQVRLYEQVNIQIEGHIIGLDEYLNFV<IDNTEEIHSKT<KV |
Parental | RKQLAGRIMLKGDNITLLQSVSN |
.K..A...MLKGD.ITLLQ..SN | |
Retrocopy | EKTTAA-VMLKGDDITLLQCISN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |