RetrogeneDB ID: | retro_mmus_1527 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 16:75746205..75746468(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000080750 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Snrpe | ||
Ensembl ID: | ENSMUSG00000090553 | ||
Aliases: | Snrpe, AL022645, C76690, SME | ||
Description: | small nuclear ribonucleoprotein E [Source:MGI Symbol;Acc:MGI:98346] |
Percent Identity: | 72.83 % |
Parental protein coverage: | 98.91 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDA-EEIHSKTK |
M.Y.GQGQ.VQKVM..PINLIFR..QNRS..QV..Y.QVN..IE..IIGFDEY..LVLDDA..E.H.KTK | |
Retrocopy | MTYGGQGQSVQKVMLHPINLIFRS*QNRSQTQV--YDQVNT*IEDGIIGFDEYKKLVLDDA<QETHFKTK |
Parental | SRKQLGRIMLKGDNITLLQSVS |
SRKQLG.IMLKGD..TLLQSVS | |
Retrocopy | SRKQLGWIMLKGD-VTLLQSVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 11 .21 RPM |
SRP007412_cerebellum | 0 .00 RPM | 9 .25 RPM |
SRP007412_heart | 0 .00 RPM | 11 .61 RPM |
SRP007412_kidney | 0 .00 RPM | 14 .80 RPM |
SRP007412_liver | 0 .00 RPM | 11 .14 RPM |
SRP007412_testis | 0 .00 RPM | 9 .88 RPM |