RetrogeneDB ID: | retro_mmus_2788 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:126990594..126990869(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Snrpe | ||
Ensembl ID: | ENSMUSG00000090553 | ||
Aliases: | Snrpe, AL022645, C76690, SME | ||
Description: | small nuclear ribonucleoprotein E [Source:MGI Symbol;Acc:MGI:98346] |
Percent Identity: | 88.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAYRGQGQK-VQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTK |
MAYRGQGQ..VQ.VMVQPI..IFRY.QNRSRIQVWLYEQVNM.IE.CIIGFDEYMNLVLDDA.EIHSKTK | |
Retrocopy | MAYRGQGQR<VQNVMVQPIKFIFRYMQNRSRIQVWLYEQVNMGIEDCIIGFDEYMNLVLDDAAEIHSKTK |
Parental | SRKQLGRIMLKGDNITLLQSVSN |
SRKQ.GRIM.KGDNITLLQSVSN | |
Retrocopy | SRKQFGRIMPKGDNITLLQSVSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 11 .21 RPM |
SRP007412_cerebellum | 0 .00 RPM | 9 .25 RPM |
SRP007412_heart | 0 .03 RPM | 11 .61 RPM |
SRP007412_kidney | 0 .02 RPM | 14 .80 RPM |
SRP007412_liver | 0 .00 RPM | 11 .14 RPM |
SRP007412_testis | 0 .00 RPM | 9 .88 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_118925 | 318 libraries | 184 libraries | 398 libraries | 127 libraries | 45 libraries |