RetrogeneDB ID: | retro_btau_481 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 12:86620575..86621136(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSBTAG00000017120 | ||
Aliases: | None | ||
Description: | Prohibitin [Source:UniProtKB/Swiss-Prot;Acc:Q3T165] |
Percent Identity: | 95.72 % |
Parental protein coverage: | 68.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLT |
QNVNITLRILFR.VASQLPRIFTSIG.DYD.RVLPSITTEILKSVVARFDAGELITQR.LVSRQVSDDLT | |
Retrocopy | QNVNITLRILFRRVASQLPRIFTSIGGDYDKRVLPSITTEILKSVVARFDAGELITQRGLVSRQVSDDLT |
Parental | ERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIA |
ERAATF.LILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKA.QQKKAAIISAEGDSKAAELIA | |
Retrocopy | ERAATFRLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAKQQKKAAIISAEGDSKAAELIA |
Parental | NSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLPQ |
NSLATAGD.LIELRKLEAAEDIA.QLSRSRNITYLPAGQSVLLQLPQ | |
Retrocopy | NSLATAGDSLIELRKLEAAEDIAHQLSRSRNITYLPAGQSVLLQLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 28 .26 RPM |
ERP005899_muscle | 0 .16 RPM | 120 .04 RPM |
SRP017611_brain | 0 .14 RPM | 25 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 73 .02 RPM |
SRP017611_liver | 0 .15 RPM | 58 .22 RPM |
SRP030211_testis | 1 .27 RPM | 20 .16 RPM |