RetrogeneDB ID: | retro_ecab_411 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 17:21694600..21694900(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSECAG00000026905 | ||
Aliases: | None | ||
Description: | ribosomal protein L37 [Source:HGNC Symbol;Acc:10347] |
Percent Identity: | 69.61 % |
Parental protein coverage: | 95.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | QKRD-DEGNVIVRKA-NKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRH |
QKRD..E...I...A.N..HT.C..CGSKAY.L.K.TC..CGYPAK.KRKYNWSAKAKR.NTTGT.R.R. | |
Retrocopy | QKRDEEENIIIWEAA>NTKHTGCHCCGSKAYRLHKATCSICGYPAKPKRKYNWSAKAKR*NTTGTNRTRP |
Parental | LKIVYRRFRHGFRE-GTTPKPKRAAVAASSSS |
LKI...RFRHG..E..TTPKPKRAAVAASSSS | |
Retrocopy | LKIIHCRFRHGSPE<RTTPKPKRAAVAASSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .06 RPM | 780 .55 RPM |
SRP021940_cerebellum | 0 .00 RPM | 406 .16 RPM |
SRP021940_embryo | 0 .08 RPM | 680 .72 RPM |
SRP021940_placental_villous | 0 .00 RPM | 383 .35 RPM |
SRP021940_synovial_membrane | 0 .14 RPM | 615 .72 RPM |
SRP021940_testis | 0 .00 RPM | 435 .90 RPM |