RetrogeneDB ID: | retro_ggor_1452 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 19:49539211..49539502(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000024827 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSGGOG00000003241 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.63 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIV |
MTKG.S.FGKRRNKTHTLC.R.GSKAYHLQKSTCGKCGY.AKRKRKYN.SAKAKR.NTTGTG.M.HLKIV | |
Retrocopy | MTKGMSLFGKRRNKTHTLCCRRGSKAYHLQKSTCGKCGYAAKRKRKYNRSAKAKRQNTTGTGGMKHLKIV |
Parental | YRRFRHGFREGTTPKPKRAAVAASSSS |
Y.RFRHGF.EGT.PKPKRAAVAASSSS | |
Retrocopy | YHRFRHGFCEGTIPKPKRAAVAASSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 82 .53 RPM |
SRP007412_cerebellum | 0 .00 RPM | 113 .70 RPM |
SRP007412_heart | 0 .00 RPM | 51 .72 RPM |
SRP007412_kidney | 0 .00 RPM | 291 .86 RPM |
SRP007412_liver | 0 .00 RPM | 406 .30 RPM |
SRP007412_testis | 0 .00 RPM | 148 .25 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2009 |
Pan troglodytes | retro_ptro_1338 |
Pongo abelii | retro_pabe_1643 |