RetrogeneDB ID:

retro_ggor_769

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:12:7227256..7227547(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL37
Ensembl ID:ENSGGOG00000003241
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_769
ATGATGAAGGGAATGTCGTTTTTCTGAAAGCATTGCAATAAGACACACATGTTGTGCCACTGCTGCGGCTCTAAGGCCTA
GCACCTTCAGAAGTCTACTTGTGACAAATGTGACTACCCTGCCAAGTGCAAGAGAAAGTGTAACTGGAGTGCAAAGGCTA
AAAGACAAAATACCACCAGGACTGATTGAATGAAGCACCTAGAAATTGTATACCACGGATTCAAGCATGGATTCTGTGGA
GGAACACCATCTAAACCCAAGAGAGCAGCTATTGCAGCAACTAGTTTATCT

ORF - retro_ggor_769 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 69.07 %
Parental protein coverage: 100. %
Number of stop codons detected: 3
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIV
M.KG.S.F.K..NKTH.LC..CGSKA.HLQKSTC.KC.YPAK.KRK.NWSAKAKR.NTT.T..M.HL.IV
RetrocopyMMKGMSFF*KHCNKTHMLCHCCGSKA*HLQKSTCDKCDYPAKCKRKCNWSAKAKRQNTTRTD*MKHLEIV
ParentalYRRFRHGFREGTTPKPKRAAVAASSSS
Y..F.HGF..GT..KPKRAA.AA.S.S
RetrocopyYHGFKHGFCGGTPSKPKRAAIAATSLS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .05 RPM 82 .53 RPM
SRP007412_cerebellum 0 .00 RPM 113 .70 RPM
SRP007412_heart 0 .00 RPM 51 .72 RPM
SRP007412_kidney 0 .00 RPM 291 .86 RPM
SRP007412_liver 0 .00 RPM 406 .30 RPM
SRP007412_testis 0 .00 RPM 148 .25 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_769 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_769 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_953
Pongo abelii retro_pabe_813

Parental genes homology:
Parental genes homology involve 16 parental genes, and 144 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000001542414 retrocopies
Bos taurus ENSBTAG000000051426 retrocopies
Callithrix jacchus ENSCJAG0000000738810 retrocopies
Equus caballus ENSECAG000000269055 retrocopies
Echinops telfairi ENSETEG0000000346323 retrocopies
Gorilla gorilla ENSGGOG00000003241 19 retrocopies
Latimeria chalumnae ENSLACG000000027871 retrocopy
Macropus eugenii ENSMEUG000000119383 retrocopies
Macaca mulatta ENSMMUG000000238076 retrocopies
Monodelphis domestica ENSMODG000000203013 retrocopies
Otolemur garnettii ENSOGAG000000343007 retrocopies
Procavia capensis ENSPCAG000000076725 retrocopies
Pteropus vampyrus ENSPVAG000000009218 retrocopies
Rattus norvegicus ENSRNOG000000125386 retrocopies
Tarsius syrichta ENSTSYG0000000620821 retrocopies
Tursiops truncatus ENSTTRG000000109267 retrocopies



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