RetrogeneDB ID: | retro_ggor_2436 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 6:69773426..69773711(-) | ||
Located in intron of: | ENSGGOG00000005906 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSGGOG00000003241 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80. % |
Parental protein coverage: | 97.94 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | KGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYR |
KGT.SF.K.RNKTHTLC..CGSKA.HLQKS.CGKCGYPAKRKRKYN.SAKA.R.N.T.TGR.RHL.IVYR | |
Retrocopy | KGTPSFEKCRNKTHTLCHHCGSKACHLQKSCCGKCGYPAKRKRKYN*SAKA*R*NNTRTGRVRHLNIVYR |
Parental | RFRHGFREGTTPKPKRAAVAASSSS |
RFR.GF.EGTT.KPKRAAV.ASS.S | |
Retrocopy | RFRRGF*EGTTSKPKRAAVVASSLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 82 .53 RPM |
SRP007412_cerebellum | 0 .00 RPM | 113 .70 RPM |
SRP007412_heart | 0 .00 RPM | 51 .72 RPM |
SRP007412_kidney | 0 .00 RPM | 291 .86 RPM |
SRP007412_liver | 0 .00 RPM | 406 .30 RPM |
SRP007412_testis | 0 .00 RPM | 148 .25 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3610 |
Pan troglodytes | retro_ptro_2440 |
Pongo abelii | retro_pabe_2962 |