RetrogeneDB ID: | retro_pabe_1586 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 18:23169767..23170410(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPPYG00000020462 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 77.88 % |
Parental protein coverage: | 80.99 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPH--KLRECLPLI-IFLRNRLKYAL-TGDEVKKICMQRF |
GPKKHLK..AAP.H.MLDKLT.V.AP..ST.PH..KLRECL.LI..FL.NRLKY...T.DEVKKI.M..F | |
Retrocopy | GPKKHLKWAAAPWHLMLDKLTRVVAPHRSTHPHPHKLRECLSLI<LFLKNRLKYVR<TQDEVKKIFMHSF |
Parental | IKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHL |
IKI.GKV.T..TYPAGFM.V.S.DKTGENFRLIY.TK..FAVHRI.PEEAKYKLCKVRKIFV.TKGIPHL | |
Retrocopy | IKINGKV*TNVTYPAGFMAVMSTDKTGENFRLIYGTKAPFAVHRIAPEEAKYKLCKVRKIFVDTKGIPHL |
Parental | VTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVH |
.T..A.TI.YPDPLIKVNDTIQ.DLE.GKIT.FI.F.TGNLCMVTGGANLGRIG.IT.RERHPGSFDVVH | |
Retrocopy | LTLGAHTICYPDPLIKVNDTIQADLENGKITGFIRFNTGNLCMVTGGANLGRIGAITDRERHPGSFDVVH |
Parental | VKDANGN |
.KDAN.N | |
Retrocopy | EKDANSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 58 .39 RPM |
SRP007412_cerebellum | 0 .00 RPM | 73 .08 RPM |
SRP007412_heart | 0 .03 RPM | 87 .60 RPM |
SRP007412_kidney | 0 .03 RPM | 131 .16 RPM |
SRP007412_liver | 0 .00 RPM | 137 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1868 |
Pan troglodytes | retro_ptro_1280 |
Gorilla gorilla | retro_ggor_1367 |