RetrogeneDB ID: | retro_pabe_1948 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2a:47204948..47205726(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPPYG00000020462 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 80.08 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MA.GPKKHLKRV.APKHW.LDKL..VF.PRP.TG.HKLR..LP.IIFLRNRLKYALTGDEVKKICMQ.FI | |
Retrocopy | MACGPKKHLKRVPAPKHWTLDKLIRVFTPRPFTGSHKLRKYLPVIIFLRNRLKYALTGDEVKKICMQWFI |
Parental | KIDGKVRTDITYPA-GFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHL |
KI.GKV.TD..YPA.GFMDVISIDKTGENF.LIYDTKG..AVH.IT.EEAKYKLCKVRKIFVGTKGIPHL | |
Retrocopy | KINGKVQTDVSYPA>GFMDVISIDKTGENFCLIYDTKGHSAVHHITSEEAKYKLCKVRKIFVGTKGIPHL |
Parental | VTHDARTIRYPDPLIKVND-TIQIDLETGKITDFIKFDTGNLCMVT-GGANLGRIGVITNRERHPGSFDV |
V.HD..TI.Y.DPLIKVN...IQI.LETGKITDFIKF..GNLCMVT.GGANLGRI.....RERH.GSFDV | |
Retrocopy | VIHDVHTIHYHDPLIKVNN<QIQIGLETGKITDFIKFNIGNLCMVT>GGANLGRI----TRERHLGSFDV |
Parental | VHVKDANGNSFATRLSNIFVIGKGNKSWISLPRGKGIRLTIAEERDKRLAAKQSSG |
VHVKDANGN.F.T.LSNIFVIGK.NK...S.P.GKG..LTIAEERD.RLAAKQ.SG | |
Retrocopy | VHVKDANGNRFVTHLSNIFVIGKSNKP*TSPP*GKGVCLTIAEERDERLAAKQRSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 58 .39 RPM |
SRP007412_cerebellum | 0 .00 RPM | 73 .08 RPM |
SRP007412_heart | 0 .03 RPM | 87 .60 RPM |
SRP007412_kidney | 0 .03 RPM | 131 .16 RPM |
SRP007412_liver | 0 .00 RPM | 137 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1689 |