RetrogeneDB ID: | retro_pabe_1005 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 13:51765037..51765688(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPPYG00000020462 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 90.78 % |
Parental protein coverage: | 82.51 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | ECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRF |
ECLPLIIFLRNRLKYAL.GDEVKKICMQRFIKIDGKV.TDITYPAGFM.VISIDKT.ENF.LIYDTK..F | |
Retrocopy | ECLPLIIFLRNRLKYALKGDEVKKICMQRFIKIDGKV*TDITYPAGFMEVISIDKTEENFCLIYDTKSLF |
Parental | AVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGN |
AVH.ITPEEAKYKLCKVRKIF.GTKGIPHLVTHD.RTI.YPDPLIKVNDTIQIDLET.KITDFIKFDTG. | |
Retrocopy | AVHHITPEEAKYKLCKVRKIFLGTKGIPHLVTHDGRTIHYPDPLIKVNDTIQIDLETSKITDFIKFDTGH |
Parental | LCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKSWISLPRGKGIRLTIA |
LCMVTG.ANLGRIGVITNRERHPGSFD..H.KDANGNSFAT.LSNIFVIGKGNK.WISLP.GKGIRLTIA | |
Retrocopy | LCMVTGSANLGRIGVITNRERHPGSFDIIHMKDANGNSFAT*LSNIFVIGKGNKLWISLP*GKGIRLTIA |
Parental | EERDKRL |
EERDKRL | |
Retrocopy | EERDKRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 58 .39 RPM |
SRP007412_cerebellum | 0 .36 RPM | 73 .08 RPM |
SRP007412_heart | 0 .09 RPM | 87 .60 RPM |
SRP007412_kidney | 0 .10 RPM | 131 .16 RPM |
SRP007412_liver | 0 .15 RPM | 137 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1204 |
Gorilla gorilla | retro_ggor_939 |