RetrogeneDB ID: | retro_mmus_2067 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:102311916..102312207(-) | ||
Located in intron of: | ENSMUSG00000027189 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083306 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl37 | ||
Ensembl ID: | ENSMUSG00000041841 | ||
Aliases: | Rpl37, 3110005M08Rik | ||
Description: | ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531] |
Percent Identity: | 69.07 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIV |
M.KG..SFG....K...L.R.CGSKAYHLQK.TC..C..P.K..RKYNWSAKAK..NT..TG.MRHL..V | |
Retrocopy | MMKGILSFGTHHSKMYIL*RCCGSKAYHLQKLTCSNCSHPGKCQRKYNWSAKAKK*NTIRTG*MRHLNSV |
Parental | YRRFRHGFREGTTPKPKRAAVAASSSS |
Y.RFRHGF.EGTTPKPKRAAV.ASSSS | |
Retrocopy | YCRFRHGFHEGTTPKPKRAAVGASSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .12 RPM | 65 .70 RPM |
SRP007412_cerebellum | 0 .17 RPM | 37 .21 RPM |
SRP007412_heart | 0 .03 RPM | 58 .93 RPM |
SRP007412_kidney | 0 .06 RPM | 45 .29 RPM |
SRP007412_liver | 0 .03 RPM | 67 .59 RPM |
SRP007412_testis | 0 .05 RPM | 51 .18 RPM |