RetrogeneDB ID: | retro_ocun_771 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:110565378..110565676(-) | ||
Located in intron of: | ENSOCUG00000008369 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSOCUG00000029674 | ||
Aliases: | None | ||
Description: | ribosomal protein L37 [Source:HGNC Symbol;Acc:10347] |
Percent Identity: | 52.48 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKY-NWSAKAKRRNTTGTGRMRHLKI |
MTKGT.SF.....K...LC..CGSK..HL.K..C.KC.Y.AK.K....NWSAKAKR..TT.TGRMR.LK. | |
Retrocopy | MTKGTASFANCYEKKCMLCCHCGSKVQHLHKLACRKCSYSAKHKKSM>NWSAKAKRQ-TTVTGRMRPLKC |
Parental | VYRRFRHGFREGTTPKPKR---AAVAASSSS |
...RF.H.........P.R...AAVA.SS.S | |
Retrocopy | LFCRFSHRWIP*QNHPPPRQKRAAVALSSPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 77 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 140 .18 RPM |
SRP017611_liver | 0 .00 RPM | 43 .39 RPM |