RetrogeneDB ID: | retro_mmus_3503 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:106612100..106612390(+) | ||
Located in intron of: | ENSMUSG00000073010 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083432 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl37 | ||
Ensembl ID: | ENSMUSG00000041841 | ||
Aliases: | Rpl37, 3110005M08Rik | ||
Description: | ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531] |
Percent Identity: | 70.41 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MTKGTSSFGKRRNKTHTLCRRCGSKAY-HLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKI |
M.KG..S.GK..NK.HTLC..CGSKAY.HLQK..CGKC.Y..K.KRKYNWSAK..RRNTTGT..MR.LK. | |
Retrocopy | MMKGKLSCGKHHNKLHTLCCCCGSKAY<HLQKAICGKCDYLVKYKRKYNWSAKSNRRNTTGTCWMRYLKT |
Parental | VYRRFRHGFREGTTPKPKRAAVAASSSS |
VY.RFRHG....T.PKPKRAAVAA.SSS | |
Retrocopy | VYHRFRHGSHDRTAPKPKRAAVAAFSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 65 .70 RPM |
SRP007412_cerebellum | 0 .00 RPM | 37 .21 RPM |
SRP007412_heart | 0 .00 RPM | 58 .93 RPM |
SRP007412_kidney | 0 .00 RPM | 45 .29 RPM |
SRP007412_liver | 0 .00 RPM | 67 .59 RPM |
SRP007412_testis | 0 .00 RPM | 51 .18 RPM |