RetrogeneDB ID: | retro_mmus_2385 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:110510065..110510302(+) | ||
Located in intron of: | ENSMUSG00000061298 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081813 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl37 | ||
Ensembl ID: | ENSMUSG00000041841 | ||
Aliases: | Rpl37, 3110005M08Rik | ||
Description: | ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531] |
Percent Identity: | 69.14 % |
Parental protein coverage: | 81.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KRRNKTHTLCRRCGSKAY-HLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHL-KIVYRRFRHG |
K...K.H.LC..CGSKA...LQKST.GKC.YPAK.KR.YN.SAK.KRRNT..TGR.RH..KIVYRRFR.. | |
Retrocopy | KHHTKMHLLCCCCGSKAS>YLQKSTYGKCDYPAKCKREYN*SAKVKRRNTIATGRIRHQ<KIVYRRFRYR |
Parental | FREGTTPKPKR |
F.EGTTPK.KR | |
Retrocopy | FHEGTTPKHKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 65 .70 RPM |
SRP007412_cerebellum | 0 .00 RPM | 37 .21 RPM |
SRP007412_heart | 0 .00 RPM | 58 .93 RPM |
SRP007412_kidney | 0 .00 RPM | 45 .29 RPM |
SRP007412_liver | 0 .00 RPM | 67 .59 RPM |
SRP007412_testis | 0 .05 RPM | 51 .18 RPM |