RetrogeneDB ID: | retro_ocun_1491 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 9:98151980..98152265(+) | ||
Located in intron of: | ENSOCUG00000003025 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSOCUG00000029674 | ||
Aliases: | None | ||
Description: | ribosomal protein L37 [Source:HGNC Symbol;Acc:10347] |
Percent Identity: | 57.58 % |
Parental protein coverage: | 98.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKR-KYNWSAKAKRRNTTGTGR-MRHLK |
MTKG.S.FGK.RNKTHTL....G.KAYHLQ.S.CGK.G.PAK....K....A.AKR..TT.T.R..RHL. | |
Retrocopy | MTKGMSLFGK*RNKTHTLHGHWGFKAYHLQQSACGKWGSPAKHTQ<KHDRGATAKRLKTTRTAR<VRHLD |
Parental | IVYRRFRHGFREGTTPK-PKRAAVAASSS |
....R.RHGF.EGT.P..P..AA..A.SS | |
Retrocopy | TARCRLRHGFHEGTAPD<PRMAALVAPSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 77 .48 RPM |
SRP017611_kidney | 0 .10 RPM | 140 .18 RPM |
SRP017611_liver | 0 .00 RPM | 43 .39 RPM |