RetrogeneDB ID: | retro_mmus_3343 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:59596178..59596423(-) | ||
Located in intron of: | ENSMUSG00000032297 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl37 | ||
Ensembl ID: | ENSMUSG00000041841 | ||
Aliases: | Rpl37, 3110005M08Rik | ||
Description: | ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531] |
Percent Identity: | 56.47 % |
Parental protein coverage: | 86.6 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | NKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGR-MRHLKIVYRRFRHGFREG |
NK....C..CG.KAYH.QKSTC.KCGYPAK...K......AK......T....RHLKIVY.R.R.GF.EG | |
Retrocopy | NKKQSVCCHCGFKAYHFQKSTCDKCGYPAKH--KRKYT*SAKAKG*NTTRQ<VRHLKIVYSRLR*GFYEG |
Parental | TTPKPKRAAVAASSS |
..PKPK.A..AASSS | |
Retrocopy | AAPKPKGATAAASSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 65 .70 RPM |
SRP007412_cerebellum | 0 .00 RPM | 37 .21 RPM |
SRP007412_heart | 0 .00 RPM | 58 .93 RPM |
SRP007412_kidney | 0 .00 RPM | 45 .29 RPM |
SRP007412_liver | 0 .00 RPM | 67 .59 RPM |
SRP007412_testis | 0 .09 RPM | 51 .18 RPM |