RetrogeneDB ID: | retro_mmus_3345 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:59844322..59844568(-) | ||
Located in intron of: | ENSMUSG00000039585 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000085116 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl37 | ||
Ensembl ID: | ENSMUSG00000041841 | ||
Aliases: | Rpl37, 3110005M08Rik | ||
Description: | ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531] |
Percent Identity: | 87.8 % |
Parental protein coverage: | 84.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | HTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPK |
HTLC.RCGSKAYHLQKST.GK.G.PAK.KR.YNWSAKAKR.NTTGTGRMRHLKIVYRRFRH.F.EGT.PK | |
Retrocopy | HTLCCRCGSKAYHLQKSTSGKYGSPAKHKRNYNWSAKAKR*NTTGTGRMRHLKIVYRRFRHVFHEGTRPK |
Parental | PKRAAVAASSSS |
PKRAAVAASSSS | |
Retrocopy | PKRAAVAASSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 65 .70 RPM |
SRP007412_cerebellum | 0 .00 RPM | 37 .21 RPM |
SRP007412_heart | 0 .06 RPM | 58 .93 RPM |
SRP007412_kidney | 0 .04 RPM | 45 .29 RPM |
SRP007412_liver | 0 .05 RPM | 67 .59 RPM |
SRP007412_testis | 0 .00 RPM | 51 .18 RPM |