RetrogeneDB ID: | retro_mmus_2575 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:67453510..67453768(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl37 | ||
Ensembl ID: | ENSMUSG00000041841 | ||
Aliases: | Rpl37, 3110005M08Rik | ||
Description: | ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531] |
Percent Identity: | 90.7 % |
Parental protein coverage: | 88.66 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREG |
RNK.HTLC..CGSKAYHLQKSTCGKCGYPAK.KRKYNWSAKAKR.NTTGT..MRHLKIVY.RFRHGFREG | |
Retrocopy | RNKAHTLCCHCGSKAYHLQKSTCGKCGYPAKSKRKYNWSAKAKR*NTTGTDWMRHLKIVYCRFRHGFREG |
Parental | TTPKPKRAAVAASSSS |
TTPKPKRAAVAASSSS | |
Retrocopy | TTPKPKRAAVAASSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 65 .70 RPM |
SRP007412_cerebellum | 0 .00 RPM | 37 .21 RPM |
SRP007412_heart | 0 .03 RPM | 58 .93 RPM |
SRP007412_kidney | 0 .00 RPM | 45 .29 RPM |
SRP007412_liver | 0 .00 RPM | 67 .59 RPM |
SRP007412_testis | 0 .05 RPM | 51 .18 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_115060 | 297 libraries | 513 libraries | 250 libraries | 8 libraries | 4 libraries |