RetrogeneDB ID: | retro_mputfur_1134 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897023.1:3117595..3118098(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB2 | ||
Ensembl ID: | ENSMPUG00000001919 | ||
Aliases: | None | ||
Description: | high mobility group box 2 [Source:HGNC Symbol;Acc:5000] |
Percent Identity: | 58.43 % |
Parental protein coverage: | 82.86 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHP-DSSVNFAEFSKKCSERWKTMSAK-EKSKFEDMAKSDK |
MG.....KPRGKMSS.A.FVQTC.E...K..P...SVNF.EFSKKCSERWKTMSAK.EK.K.EDMA.... | |
Retrocopy | MGRENLKKPRGKMSSCASFVQTC*EH--KEAP>EASVNFSEFSKKCSERWKTMSAK<EK*KLEDMAR--W |
Parental | ARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFL-FCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQS |
.R..R...N..P..G..K....DP.A.....S..FL.FC.E..PKI..EHPGLS.GD.AKKLGE..S... | |
Retrocopy | TRKERGKENLYPR*GGNKQMFRDPSA-LEASSGLFL>FCAELHPKIR-EHPGLSVGDIAKKLGE-*SNTA |
Parental | AKDKQPYEQKAAKLK-EKYEKDIAAYRAKGKSEAGKKG |
...KQPYE.KAAKLK..KY..DI.AY.AKGKS...KKG | |
Retrocopy | VYGKQPYEKKAAKLK>KKYV*DIVAYPAKGKSDVAKKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |