RetrogeneDB ID: | retro_mputfur_1475 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897155.1:454114..454684(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB2 | ||
Ensembl ID: | ENSMPUG00000001919 | ||
Aliases: | None | ||
Description: | high mobility group box 2 [Source:HGNC Symbol;Acc:5000] |
Percent Identity: | 64.06 % |
Parental protein coverage: | 90.48 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | KPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKS-KFEDMAKSDKARYDREMK |
K...KMSSYAFFVQT..EE.KKKHP..SVNF.EFSKKCS.RWKTMSAKEK..KFEDMA..DKAR..REMK | |
Retrocopy | KSQDKMSSYAFFVQT*LEEYKKKHPEASVNFSEFSKKCSDRWKTMSAKEKE<KFEDMARVDKARFEREMK |
Parental | NYVPP-KGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYE |
.Y.PP.KG..K.K.KD..APK.PP.AFFLFCSE..PKIK.E.P.LSIGD.AKKL.EM.....A..K...E | |
Retrocopy | IYFPP>KGETKKKFKDLSAPKKPPLAFFLFCSEYHPKIKGEYPNLSIGDVAKKLREM*NNTAAEKK*HCE |
Parental | QKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEE |
.KAA.LK.KYEKDIAAY.AKGKS...KKG.........K...E..EEE.... | |
Retrocopy | KKAAELKKKYEKDIAAYEAKGKSDRAKKGSCQG*K*QEKEGEEEDEEEDDDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |