RetrogeneDB ID: | retro_cjac_832 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 11:16351793..16352304(+) | ||
Located in intron of: | ENSCJAG00000013591 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB2 | ||
Ensembl ID: | ENSCJAG00000005112 | ||
Aliases: | None | ||
Description: | high mobility group box 2 [Source:HGNC Symbol;Acc:5000] |
Percent Identity: | 57.14 % |
Parental protein coverage: | 83.9 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSK-KCSERWKTMSAKEKSKFEDMAKSDKA |
M.KG.P.KP.GKMS.YAFFVQ.CREEHKKKHP...VNFA.F...K.SER.KTMS.KEK.KF..M.K.D.. | |
Retrocopy | MAKGHPKKPKGKMSAYAFFVQMCREEHKKKHPEVLVNFAKFFR<KYSERSKTMSGKEKAKFDKMTKLDNV |
Parental | RYDREMKNYVPPKGDKKGKKKDPNA-PKRPPSAFF-LFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQS |
..D.EMK.Y.P.KG.K.....DPN..P...P...F.LFCSE.RPKIKS...G.SIG.TA.KLGEMW.... | |
Retrocopy | HCDQEMKDYKPAKGGK--EEEDPNT<PHKRPPSGFFLFCSEFRPKIKSTNLGISIGNTATKLGEMWRKLN |
Parental | AKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGK |
...KQP...K..KLKEKYEK.......KGK..... | |
Retrocopy | DSEKQPDITKTTKLKEKYEKAVVEFKSKGKFDGAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 1 .26 RPM | 31 .77 RPM |
SRP051959_heart | 0 .47 RPM | 19 .50 RPM |
SRP051959_kidney | 0 .80 RPM | 11 .14 RPM |
SRP051959_liver | 0 .45 RPM | 11 .16 RPM |
SRP051959_lung | 1 .55 RPM | 35 .40 RPM |
SRP051959_lymph_node | 1 .92 RPM | 54 .75 RPM |
SRP051959_skeletal_muscle | 0 .61 RPM | 14 .92 RPM |
SRP051959_spleen | 1 .11 RPM | 49 .81 RPM |