RetrogeneDB ID: | retro_mputfur_1644 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897670.1:20696..21222(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB2 | ||
Ensembl ID: | ENSMPUG00000001919 | ||
Aliases: | None | ||
Description: | high mobility group box 2 [Source:HGNC Symbol;Acc:5000] |
Percent Identity: | 52.78 % |
Parental protein coverage: | 82.86 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MGKGDPNK-PRGK-MSSYAFFVQTCREEH-KKKHPDS-SVNFAEFSKKCSERWKTMSAKEKSKFEDMAKS |
M..G.P.K.PRGK..SSYAFF..TC...H.KK....S.S.....F.KK....W..MSAK.K.KFED.AK. | |
Retrocopy | MYRGYPKKKPRGK<ISSYAFFMKTCL*DHKKKQVDAS<SQSNIQFYKKSLANWRIMSAK*KGKFEDTAKA |
Parental | DKARYDREMKNYVPPKGD-KKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSE |
.KA.Y.R....Y..PKG...KG....PNAPK..PSAFFLFCSE..PK.K.E.P.L.I.D.AKKLGE.W.. | |
Retrocopy | RKAHYERKIRTYISPKGE>QKGCLRVPNAPKKTPSAFFLFCSEYHPKTKRELPNLFISDVAKKLGETWNN |
Parental | QSAKDKQPYEQKAAKLKEKYEKDIAAYRAKG-KSEAGKKG |
..A...Q..........EKY.KDIAA..AKG.KS.A.KKG | |
Retrocopy | TAADNEQLFGKRLLS*REKYRKDIAAEQAKG<KSDASKKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |