Parental gene:

HMGB2, ENSCJAG00000005112

Aliases:None
Description:high mobility group box 2 [Source:HGNC Symbol;Acc:5000]
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:16191387..16194305(+)


>ENSCJAG00000005112
ATGGGTAAAGGAGACCCCAACAAGCCGAGGGGCAAAATGTCCTCGTACGCCTTCTTCGTGCAGACCTGCCGGGAAGAACA
CAAGAAGAAACACCCGGACTCTTCCGTCAATTTCGCGGAATTCTCCAAGAAGTGCTCGGAGAGATGGAAGACCATGTCTG
CAAAGGAGAAGTCGAAGTTTGAAGATATGGCAAAAAGTGACAAAGCTCGCTATGATAGGGAGATGAAAAATTACGTCCCT
CCCAAAGGTGATAAGAAAGGAAAGAAAAAGGATCCCAATGCTCCTAAAAGGCCACCATCTGCCTTCTTCCTGTTTTGCTC
TGAACATCGCCCAAAGATCAAAAGTGAACATCCAGGCCTATCCATTGGGGATACTGCAAAGAAATTGGGTGAAATGTGGT
CTGAGCAGTCAGCCAAAGATAAACAACCATATGAACAGAAAGCAGCTAAGCTAAAGGAGAAATATGAAAAGGATATTGCT
GCATATCGTGCCAAGGGCAAAAGTGAAGCAGGAAAGAAAGGCCCTGGCAGGCCAACAGGCTCAAAGAAGAAGAATGAACC
AGAAGATGAGGAGGAAGAAGATGAAGATGATGAGGAAGAGGATGAAGATGAAGAATAA

Library Parental gene expression (RPM)
SRP051959_spleen 49 .81 RPM
SRP051959_skeletal_muscle 14 .92 RPM
SRP051959_lymph_node 54 .75 RPM
SRP051959_lung 35 .40 RPM
SRP051959_liver 11 .16 RPM
SRP051959_kidney 11 .14 RPM
SRP051959_heart 19 .50 RPM
SRP051959_colon 31 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000015101 ortholog_one2one 1 retrogene
retro_btau_58,
Callithrix jacchus ENSCJAG00000003936 within_species_paralog 9 retrogenes
retro_cjac_1596, retro_cjac_1950, retro_cjac_2343, retro_cjac_2469, retro_cjac_2470, retro_cjac_2738, retro_cjac_2900, retro_cjac_688, retro_cjac_965,
Callithrix jacchus ENSCJAG00000021615 other_paralog 11 retrogenes
retro_cjac_1042, retro_cjac_1546, retro_cjac_1819, retro_cjac_1842, retro_cjac_1934, retro_cjac_2269, retro_cjac_2901, retro_cjac_2934, retro_cjac_3090, retro_cjac_718, retro_cjac_895,
Dasypus novemcinctus ENSDNOG00000019440 possible_ortholog 4 retrogenes
retro_dnov_1142, retro_dnov_1457, retro_dnov_454, retro_dnov_532,
Echinops telfairi ENSETEG00000010379 possible_ortholog 3 retrogenes
retro_etel_1474, retro_etel_1841, retro_etel_2023,
Echinops telfairi ENSETEG00000016379 possible_ortholog 1 retrogene
retro_etel_414,
Felis catus ENSFCAG00000004218 ortholog_one2one 2 retrogenes
retro_fcat_279, retro_fcat_52,
Homo sapiens ENSG00000164104 ortholog_one2one 1 retrogene
retro_hsap_3663,
Gorilla gorilla ENSGGOG00000015882 ortholog_one2one 1 retrogene
retro_ggor_2474,
Loxodonta africana ENSLAFG00000010417 ortholog_one2one 3 retrogenes
retro_lafr_1096, retro_lafr_1142, retro_lafr_595,
Macropus eugenii ENSMEUG00000002256 ortholog_one2one 3 retrogenes
retro_meug_1920, retro_meug_1989, retro_meug_550,
Myotis lucifugus ENSMLUG00000026303 ortholog_one2one 4 retrogenes
retro_mluc_1113, retro_mluc_1381, retro_mluc_1726, retro_mluc_2011,
Monodelphis domestica ENSMODG00000003527 ortholog_one2one 3 retrogenes
retro_mdom_1160, retro_mdom_1919, retro_mdom_69,
Mustela putorius furo ENSMPUG00000001919 ortholog_one2one 9 retrogenes
retro_mputfur_1134, retro_mputfur_1167, retro_mputfur_1379, retro_mputfur_1475, retro_mputfur_1631, retro_mputfur_1633, retro_mputfur_1644, retro_mputfur_940, retro_mputfur_989,
Mus musculus ENSMUSG00000054717 ortholog_one2one 23 retrogenes
retro_mmus_1477, retro_mmus_1745, retro_mmus_1974, retro_mmus_1975, retro_mmus_2269, retro_mmus_2527, retro_mmus_2528, retro_mmus_2529, retro_mmus_2530, retro_mmus_2531, retro_mmus_2843, retro_mmus_2884, retro_mmus_3248, retro_mmus_3426, retro_mmus_461, retro_mmus_626, retro_mmus_642, retro_mmus_796, retro_mmus_861, retro_mmus_901, retro_mmus_902, retro_mmus_904, retro_mmus_905,
Nomascus leucogenys ENSNLEG00000006662 ortholog_one2one 3 retrogenes
retro_nleu_113, retro_nleu_517, retro_nleu_550,
Oryctolagus cuniculus ENSOCUG00000000074 ortholog_one2one 1 retrogene
retro_ocun_1829,
Pongo abelii ENSPPYG00000015204 ortholog_one2one 3 retrogenes
retro_pabe_297, retro_pabe_3005, retro_pabe_3380,
Pan troglodytes ENSPTRG00000016597 ortholog_one2one 3 retrogenes
retro_ptro_19, retro_ptro_2484, retro_ptro_2789,
Rattus norvegicus ENSRNOG00000013167 ortholog_one2many 2 retrogenes
retro_rnor_173, retro_rnor_54,
Ictidomys tridecemlineatus ENSSTOG00000023980 ortholog_one2one 2 retrogenes
retro_itri_1720, retro_itri_880,
Tursiops truncatus ENSTTRG00000015650 ortholog_one2one 1 retrogene
retro_ttru_1640,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_832 57.14 83.90
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2. retro_cjac_2555 93.22 85.85
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Download FASTA sequences of all ENSCJAG00000005112 retrocopies