RetrogeneDB ID: | retro_tbel_1367 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4510:54067..54650(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTBEG00000002918 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 70.85 % |
Parental protein coverage: | 74.9 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKID |
GPK.HLK.VAAPK.WMLDKLT.VF.P.P.TG.HKLRECLPLIIFLRNRLK..LTGDE.KKICMQ.F.KID | |
Retrocopy | GPKMHLKQVAAPKLWMLDKLTNVFDPHPFTGLHKLRECLPLIIFLRNRLKSVLTGDEAKKICMQWFMKID |
Parental | GKVRTDITY-PAGFMDVISIDKTGENFRLIYDTK-GRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVT |
GK...DITY.P.GF.DVI.IDKT..NF...YDT....F..H.ITPEEAKYKLC.VRK.F.G.K....L.. | |
Retrocopy | GKAHADITY<PSGFTDVIGIDKTRKNFY*TYDTR<DHFIIHHITPEEAKYKLCEVRKFFFGYK--KNLSS |
Parental | HDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRER |
..A.TIR.PDPLIKVN.TIQIDLET.K.T..IKFD.GNLC.VTGGA.LGRIG.I...ER | |
Retrocopy | SNAHTIRHPDPLIKVNGTIQIDLETSKTTYLIKFDSGNLCTVTGGAHLGRIGMIIPTER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |