RetrogeneDB ID: | retro_tbel_1465 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4800:35433..35916(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTBEG00000002918 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 77.58 % |
Parental protein coverage: | 61.22 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | KTGENFRLIYDTK-GRFAVHRITPEE-AKYKLCKVRKIF-VGTKGIPHLVTHDARTIRYPDPLIKVNDTI |
.TGENF.LIYD.K....AVHRITPEE..KYK.CKVRKI...GTKGIPHLVTHDARTI.Y.D.L.KVNDT. | |
Retrocopy | QTGENFQLIYDIK<AHVAVHRITPEE>SKYKSCKVRKIL<AGTKGIPHLVTHDARTIHYLDFLVKVNDTS |
Parental | QIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIG- |
.IDLETGK.T.FIKFDTGNL..VTGGANLGRIGVIT.RER.PGSFDVV.VKDANGNSFATRLS.IF.IG. | |
Retrocopy | *IDLETGKATGFIKFDTGNLYLVTGGANLGRIGVITDRERYPGSFDVVYVKDANGNSFATRLSSIFIIG> |
Parental | KGNKPWISLPRGKGIRLTIAEERDK |
KGNK.WIS.P.GK.IRL.IAE.R.. | |
Retrocopy | KGNKSWISFP*GKVIRLSIAEARQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |