RetrogeneDB ID: | retro_tbel_2711 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_117302:12752..13542(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTBEG00000002918 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 90.53 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIF-LRNRLKYALTGDEVKKICMQRF |
MA.GPKKHLK.VAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIF.....L.YALTGDEVKKICM.RF | |
Retrocopy | MAPGPKKHLKWVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIF>IQEQLTYALTGDEVKKICM*RF |
Parental | IKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHL |
IKIDGKV.TDITYPAGFMDVISIDKTGENF.LIYD.KGRFA.H.ITPEEAK.KLCKVRKIFVGTKG.PHL | |
Retrocopy | IKIDGKVHTDITYPAGFMDVISIDKTGENFHLIYDNKGRFAFHGITPEEAKHKLCKVRKIFVGTKGTPHL |
Parental | VTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVH |
VT.DARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDT.NLCMVTGGA.LGRIGVITNRERHPGSFDVVH | |
Retrocopy | VTPDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTSNLCMVTGGADLGRIGVITNRERHPGSFDVVH |
Parental | VKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
VKDANGNSFATRLSNIFVIGKGNK..IS.PRGKGI.LT.AEERDKRLA.KQSSG | |
Retrocopy | VKDANGNSFATRLSNIFVIGKGNKQRISFPRGKGIHLTVAEERDKRLAVKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |