RetrogeneDB ID: | retro_mmul_1999 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 6:36911858..36912395(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4Y1 | ||
Ensembl ID: | ENSMMUG00000003295 | ||
Aliases: | RPS4Y1, RPS4X | ||
Description: | 40S ribosomal protein S4, X isoform [Source:RefSeq peptide;Acc:NP_001252551] |
Percent Identity: | 83.89 % |
Parental protein coverage: | 68.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MA.GPKKHLK.VAAPKHWML.KLT.VFAP.PST..HKLRECLPLIIFLRNRLK.ALTGDEVK.ICMQ.FI | |
Retrocopy | MACGPKKHLKWVAAPKHWMLHKLTSVFAPCPSTSHHKLRECLPLIIFLRNRLKNALTGDEVK-ICMQGFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
K.DGK.RTDITY.AGFMD.ISIDK.G.NF.L.YDTKG.FAVH.ITPEEAKYK..KVRKIF.GTK.IPHLV | |
Retrocopy | KVDGKFRTDITYTAGFMDIISIDKMGDNFHLTYDTKGHFAVHHITPEEAKYKWGKVRKIFAGTKEIPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL |
T.DAR.I.YPDPLIKVNDTIQIDLETGKIT.FIKFDTG.L | |
Retrocopy | TRDARSIHYPDPLIKVNDTIQIDLETGKITGFIKFDTGTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 51 .10 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 129 .31 RPM |
SRP007412_cerebellum | 0 .19 RPM | 36 .23 RPM |
SRP007412_heart | 0 .00 RPM | 82 .85 RPM |
SRP007412_kidney | 0 .00 RPM | 77 .70 RPM |
SRP007412_liver | 0 .04 RPM | 92 .82 RPM |
SRP007412_testis | 0 .00 RPM | 10 .06 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3162 |
Pan troglodytes | retro_ptro_2276 |
Gorilla gorilla | retro_ggor_1354 |
Pongo abelii | retro_pabe_2629 |