RetrogeneDB ID: | retro_fcat_1751 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F1:31616387..31616893(+) | ||
Located in intron of: | ENSFCAG00000011035 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000025296 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSFCAG00000012041 | ||
Aliases: | RPS4, RPS4X | ||
Description: | 40S ribosomal protein S4, X isoform [Source:UniProtKB/Swiss-Prot;Acc:P62705] |
Percent Identity: | 84.12 % |
Parental protein coverage: | 64.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | TGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDL |
TGENF.LIYDTK.RF.VH.IT...AKYKL.KVRKIFVGTKGI.HLVTHD.RTI.YPDPLIKVND.IQIDL | |
Retrocopy | TGENFYLIYDTKSRFVVHQITLKKAKYKLYKVRKIFVGTKGILHLVTHDTRTIHYPDPLIKVNDSIQIDL |
Parental | ETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNI-FVIGKGNK |
ET...TDFIKFDTGNLCMVTGGANLGRIGVITNRER.PGSFDVVHVKDANG.SFAT.LSNI.FVIGK.NK | |
Retrocopy | ETVNSTDFIKFDTGNLCMVTGGANLGRIGVITNRERYPGSFDVVHVKDANGSSFATWLSNI<FVIGKSNK |
Parental | PWISLPRGKGIRLTIAEERDKRLAAKQSSG |
P.ISL..GKGI.LTIAEERDKRL.AKQ..G | |
Retrocopy | P*ISLLCGKGICLTIAEERDKRLVAKQGNG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 209 .23 RPM |
SRP017611_kidney | 0 .00 RPM | 796 .64 RPM |
SRP017611_liver | 0 .00 RPM | 316 .51 RPM |