RetrogeneDB ID: | retro_tbel_2944 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_124691:136797..137580(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTBEG00000002918 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 73.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
.ARG..K.L...AAPKHWMLDKL.GVF.PRP.TGPH.LRECLPLI.FLRNRLK.A..GDEVK.IC..... | |
Retrocopy | VARGSEKPLRQAAAPKHWMLDKLPGVFVPRPPTGPHQLRECLPLIVFLRNRLKSASPGDEVK-ICSL*LV |
Parental | KIDGK-VRTDITYPAGFMDVISIDKTGENFRLIYDTK-GRFAVHRITPEEAKYKLCKVRKIFVGTKGIPH |
KID.K.V.TDIT..AGF..VIS.DK.GEN..LI.DT...R.AVH.ITP.EA.Y.LCKVRKIFVGTKG..H | |
Retrocopy | KIDAK<VCTDITHSAGFTGVISFDKPGENLCLICDTR<SRLAVHCITPAEAMYWLCKVRKIFVGTKGTLH |
Parental | LVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVV |
LVTHDARTI.YPDPL.KVNDTIQ.D..TGK.TDF..FD...L..VTGGA.LGRIGVITNRERHPGSFDVV | |
Retrocopy | LVTHDARTICYPDPLLKVNDTIQTDTGTGKMTDFVQFDSEYLGTVTGGATLGRIGVITNRERHPGSFDVV |
Parental | HVKDANGNSFATRLSNIFVIG-KGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
HVKD.NGNSFA..LSN.FVI..KGNKPWISL.RGKGI.LT.AE.RDKRL.AK...G | |
Retrocopy | HVKDCNGNSFASQLSNTFVIR<KGNKPWISLSRGKGIYLTTAEDRDKRLVAKTAGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |