RetrogeneDB ID: | retro_tbel_2722 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_11757:14980..15455(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTBEG00000002918 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 86.16 % |
Parental protein coverage: | 60.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | HKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDT |
H.L....PLIIFLRNR.KY.LTGDEVKKICMQRFIKIDGKV.TDITYPAGFM.VI.IDKTGENF.LIYD. | |
Retrocopy | HPLPLIHPLIIFLRNRRKYGLTGDEVKKICMQRFIKIDGKVHTDITYPAGFMNVINIDKTGENFHLIYDI |
Parental | KGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITD-FIK |
KG.FAVH.ITPEEAKYKLC.VRKIFVGTKG.PHLV.HDARTI.YP.PLIKVNDTIQIDLETGKITD.FIK | |
Retrocopy | KGGFAVHHITPEEAKYKLCTVRKIFVGTKGTPHLVMHDARTIHYPVPLIKVNDTIQIDLETGKITD>FIK |
Parental | FDTGNLCMVTGGANLGRIG |
FDTGNLC.VTG.ANLGRIG | |
Retrocopy | FDTGNLCIVTGVANLGRIG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |