RetrogeneDB ID: | retro_fcat_563 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:123101255..123101855(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSFCAG00000012041 | ||
Aliases: | RPS4, RPS4X | ||
Description: | 40S ribosomal protein S4, X isoform [Source:UniProtKB/Swiss-Prot;Acc:P62705] |
Percent Identity: | 80.2 % |
Parental protein coverage: | 76.05 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPH-KLRECLPLIIFLRNRLKYALTGDEVKKICMQRF |
.A.GPK.HLKR.A.PKH..LDKLTGVF.P.PSTG.H.K.RE.LPLIIFLRN.LKY.LTGDEVKKIC.Q.F | |
Retrocopy | VAHGPKQHLKRIAPPKH*ALDKLTGVFVPHPSTGLH>KMREYLPLIIFLRNKLKYVLTGDEVKKICIQCF |
Parental | IKIDGK-VRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPH |
I.IDGK.V.TDITYPAGFMDVISIDKTGE.F..I.DTKG.FAV..ITP.EAK.K.CKVRKIFVGTKGIPH | |
Retrocopy | IEIDGK<VQTDITYPAGFMDVISIDKTGESFHMICDTKGHFAVCWITPQEAKCKFCKVRKIFVGTKGIPH |
Parental | LVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRER |
.VTHDA.TI...DPLIK.NDTIQIDLET..ITDFIKFDTGNLCMVT.GA.LGRIGVITNRER | |
Retrocopy | PVTHDALTIL*TDPLIKENDTIQIDLETEEITDFIKFDTGNLCMVTRGADLGRIGVITNRER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 209 .23 RPM |
SRP017611_kidney | 0 .00 RPM | 796 .64 RPM |
SRP017611_liver | 0 .00 RPM | 316 .51 RPM |