RetrogeneDB ID: | retro_fcat_1155 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:208769735..208770157(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSFCAG00000012041 | ||
Aliases: | RPS4, RPS4X | ||
Description: | 40S ribosomal protein S4, X isoform [Source:UniProtKB/Swiss-Prot;Acc:P62705] |
Percent Identity: | 64.08 % |
Parental protein coverage: | 53.61 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGP-HKLRECLPLIIFLRNRLKYALTGDEVKKICMQRF |
.A..PKK.LK.VAA.KH.MLD.....FAPR.S..P..KLRE.LPLII..RNR...AL.G.EVKK.....F | |
Retrocopy | LACEPKKQLKCVAALKHQMLDQVNSMFAPRLSASP<SKLRERLPLIILPRNRVECALSGAEVKKT*VPWF |
Parental | IKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHL |
.KIDGKV..D.TYPAG.MD.I.IDKTGE.F.L..DTK..F.VH..TPE.AK.K.CKVRKIFVGT.GIP.L | |
Retrocopy | LKIDGKV*NDATYPAGLMDAINIDKTGEKFHLT*DTKFYFVVHHFTPEKAKHKMCKVRKIFVGTHGIPQL |
Parental | VT |
VT | |
Retrocopy | VT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 209 .23 RPM |
SRP017611_kidney | 0 .00 RPM | 796 .64 RPM |
SRP017611_liver | 0 .00 RPM | 316 .51 RPM |