RetrogeneDB ID: | retro_tbel_2715 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_117363:107475..108261(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTBEG00000002918 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 93.92 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKY.LTGDEVK.ICM.RFI | |
Retrocopy | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYTLTGDEVK-ICM*RFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
KIDGKV.TDITYPAGFMDVISIDKTGENFRLIYDT.GRFA.H.ITPEE.KYKLCKVRKIFVGTK..PHLV | |
Retrocopy | KIDGKVHTDITYPAGFMDVISIDKTGENFRLIYDTTGRFAAHGITPEEVKYKLCKVRKIFVGTKRTPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHV |
THDA.TIRYPDPLIKVNDTIQIDLE.GKITDFIKFDT.NLCMVTGGA.LGRIGVITNRERHPGSFDVVHV | |
Retrocopy | THDACTIRYPDPLIKVNDTIQIDLEMGKITDFIKFDTSNLCMVTGGADLGRIGVITNRERHPGSFDVVHV |
Parental | KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
KDANGNSFATRLSNIFVIGKGNK.WISLPRGKGI.LTIAEERDKRLAAKQSSG | |
Retrocopy | KDANGNSFATRLSNIFVIGKGNKQWISLPRGKGIHLTIAEERDKRLAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |