RetrogeneDB ID: | retro_tbel_3172 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_132839:43115..43794(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTBEG00000002918 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 86.9 % |
Parental protein coverage: | 86.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KLRECLPLIIFLR-NRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDT |
KLR.CL....FLR..RLK.ALTGDEVKKICMQ.FIKIDGKV.TDITYPAGFMDVISIDKTGENFRLIYDT | |
Retrocopy | KLRDCLSFHHFLR<DRLKNALTGDEVKKICMQQFIKIDGKVCTDITYPAGFMDVISIDKTGENFRLIYDT |
Parental | KGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPD-PLIKVNDTIQIDLETGKITDFIK |
KGRFAVHR.TP.EAKYKLCKVRKIFVGT.GIP.LVTHDA.TI.YPD..LI.V..TIQIDLETGKITDFIK | |
Retrocopy | KGRFAVHRNTPQEAKYKLCKVRKIFVGTEGIPRLVTHDAHTICYPD<SLIRVSNTIQIDLETGKITDFIK |
Parental | FDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGI |
FDTG.LCMVTGGA.LGR.GVITNRERHPGSFDVVHVKDA.GNSF.TR.SN.FVIGKGNKPWISLPRGKGI | |
Retrocopy | FDTGDLCMVTGGASLGRSGVITNRERHPGSFDVVHVKDAIGNSFVTRCSNVFVIGKGNKPWISLPRGKGI |
Parental | RLTIAEERDKRLAAKQSSG |
.LTIAEERDKRLAA.QSSG | |
Retrocopy | HLTIAEERDKRLAARQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |