RetrogeneDB ID: | retro_tbel_4569 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_90914:4468..5245(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTBEG00000002918 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 84.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MARGPKKHLK..AAPKHW.LDK...VFAPRPST.PHKLRECLPLIIFLRNRLKYA..GDEVKKIC....I | |
Retrocopy | MARGPKKHLK*IAAPKHWKLDKVIDVFAPRPSTDPHKLRECLPLIIFLRNRLKYAIRGDEVKKIC----I |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
KI.GKVRTDITYPAGF.DVISIDKT.ENF.LI.DTKG.FAVH..TPEE.KYKL..VRKIFVGTKGI..LV | |
Retrocopy | KINGKVRTDITYPAGFVDVISIDKTRENFHLI*DTKGHFAVHCVTPEETKYKL*NVRKIFVGTKGILLLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHV |
...A.TI.YPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCM.TGGANLGRIGVITNRER.PGSFD.VHV | |
Retrocopy | MYEAQTIHYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMMTGGANLGRIGVITNRERDPGSFDMVHV |
Parental | KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
KDANGNSF.TRLSNIF.IGKGNKPWISLP.G.GI.LTI..ER.KRLAAKQSSG | |
Retrocopy | KDANGNSFDTRLSNIFAIGKGNKPWISLPWG*GICLTIT*EREKRLAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |