RetrogeneDB ID: | retro_tbel_2659 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_115579:147993..148782(+) | ||
Located in intron of: | ENSTBEG00000008830 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTBEG00000002918 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 93.16 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MARGPKKHLKRVAAPKHWMLDKLTGVF.PRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIC.QRFI | |
Retrocopy | MARGPKKHLKRVAAPKHWMLDKLTGVFDPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICTQRFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
KIDGKVRTDI.YPAGFMDVI.IDKTGENF.LIYDTKGRFAVHRITP.EAKYKLCKVRKIF.GTKGIPHLV | |
Retrocopy | KIDGKVRTDIAYPAGFMDVIGIDKTGENF*LIYDTKGRFAVHRITPQEAKYKLCKVRKIFLGTKGIPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHV |
THDARTIRY.DPLIKVNDTIQIDLE.GK..DFIKFDTGNLCMV.GGA.LGRIGVITNRERHPGSFDV.HV | |
Retrocopy | THDARTIRYLDPLIKVNDTIQIDLEMGKSSDFIKFDTGNLCMVAGGASLGRIGVITNRERHPGSFDVFHV |
Parental | KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
KDANGNSFATRLSNIFVIG.GNKP.ISLPRGKGIRLTIA.ERDKR.AAKQSSG | |
Retrocopy | KDANGNSFATRLSNIFVIGNGNKPGISLPRGKGIRLTIAKERDKRPAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |