RetrogeneDB ID: | retro_tbel_877 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3220:565248..565869(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTBEG00000002918 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 60.38 % |
Parental protein coverage: | 79.47 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | VAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGK-VRTDI |
V.A.KHW..DKLT.VF...PS.GP.KL...LP.I..LRNRLKYALTGD.VK.I.M..FI..DGK...TDI | |
Retrocopy | VTASKHWI*DKLTIVFVAGPSSGPYKLGGWLPFISLLRNRLKYALTGDKVK-ISMPLFIRTDGK<IQTDI |
Parental | TYPAGFMDVI-SIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRY |
.Y.A.FMDVI.S..K...NF.LI..T.G.FAVH..T.EE.K.K.CKVR...VG.KGI.HL..H..RTIRY | |
Retrocopy | SYHANFMDVI<SVEKIK*NFCLILNTQGHFAVHCVTSEESKDKYCKVRSTSVGIKGIIHLAAHSVRTIRY |
Parental | PDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA-NGNSF |
P..L...NDT..IDL..GKIT.F....TG.LC....G.NLGRIG.I.NRER.PGSFDV..VKDA...NSF | |
Retrocopy | PGSLV*MNDTTSIDLQMGKITSFNTLNTGDLCRMPRGTNLGRIGMIANRERQPGSFDVIRVKDA<HCNSF |
Parental | AT |
.T | |
Retrocopy | PT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |