RetrogeneDB ID: | retro_mmul_43 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 19:40641907..40642609(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000028796 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4Y1 | ||
Ensembl ID: | ENSMMUG00000003295 | ||
Aliases: | RPS4Y1, RPS4X | ||
Description: | 40S ribosomal protein S4, X isoform [Source:RefSeq peptide;Acc:NP_001252551] |
Percent Identity: | 78.66 % |
Parental protein coverage: | 90.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
.A.GPK.HLKRVAA..HWMLDKLTGVFA.RPSTGPHKLRECLP..IFLRNRLKYALTGDEVKKICMQ.FI | |
Retrocopy | VAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQWFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
K.DGK.RTD...P...MDVISIDK.GE.F.LIY....RFA.HRITPEE.KYKLCK.RKIFV..KGIPHLV | |
Retrocopy | KVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHV |
.HD..T.R.PD.LIKVNDTIQIDLETGKIT...KFDTGNLC.VTGG.N.GRIGVITNRERHP.SFD..HV | |
Retrocopy | IHDIHTVRHPDSLIKVNDTIQIDLETGKIT-ALKFDTGNLCLVTGGGNWGRIGVITNRERHPVSFDTFHV |
Parental | KDANGNSFATRLSNIFVIGKGNKPWISLP |
KDAN.NSF....S.IFVI.KGNKPWISLP | |
Retrocopy | KDANSNSF----SIIFVIDKGNKPWISLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 51 .10 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 129 .31 RPM |
SRP007412_cerebellum | 0 .00 RPM | 36 .23 RPM |
SRP007412_heart | 0 .00 RPM | 82 .85 RPM |
SRP007412_kidney | 0 .00 RPM | 77 .70 RPM |
SRP007412_liver | 0 .04 RPM | 92 .82 RPM |
SRP007412_testis | 0 .15 RPM | 10 .06 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2052 |
Pan troglodytes | retro_ptro_1367 |
Gorilla gorilla | retro_ggor_1479 |